The VAT payment report is not picking up the correct amount in box 9. The first transaction is shown OK but all subsequent transactions do not hit box 9. If you refresh the report then the total in box 1 appears in box 9 and the amount from box 9 in box 1.
This report was an issue in AX 2009 and was correct with a hotfix, now it seems that the same issue has been replicated in AX 2012.
All transactions have been correctly entered and all other VAT reports show these transactions correctly.